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| No. | Mission |
| 1 | Stop Terrorist Threat |
| 2 | Worker Robot Removal |
| 3 | Rescue Survey Team |
| 4 | Terrorist Pursuit |
| 5 | Guard Freight Train |
| 6 | Prototype MT Test (1st) |
| 7 | Guard Airplane |
| 8 | Stop Gas Exposure |
| 9 | Repulse Enemy Attack |
| 10 | Exterminate Organisms |
| 11 | Remove Base Occupants |
| 12 | Destroy Space Catapult |
| 13 | Destroy Base Generator |
| 14 | Mop up Chrome Remnants |
| 15 | Destroy Justice |
| 16 | Chrome Uprising |
| 17 | Destroy Plane Computar |
| 18 | AC Battle |
| 19 | Attack Urban Center |
| 20 | Eliminate Squatters (1st) |
| 21 | Eliminate Squatters (2nd) |
| 22 | Destroy Unknown MT's |
| 23 | Rescue Transport Truck |
| 24 | Stop Security MT's |
| 25 | Reclaim Oil Facility |
| 26 | Recover Capsules |
| 27 | Capture Space Station |
| 28 | Release Organisms |
| 29 | Stop Security MT |
| 30 | Destroy Base Computar |
| 31 | Destroy Floating Mines |
| 32 | AC Battle |
| No. | Mission | Hidden Parts | Location |
| 33 | Remove Gun Emplacements | LN-SSVT | Mission Completion |
| 34 | Secret Factory Recon | WM-S60/4 | Southwest Corner |
| 35 | Exterminate Organisms | QX-AF | Opposite Wall of Queen's Chambers |
| 36 | Guard Freight Train | HD-X1487 | Container Yard |
| 37 | Destory Fuel Depot | WG-1-KARASAWA | Farthest Wall; Raised Area with Tabks in the Corner |
| 38 | Prototype MT Test (2nd) | SP-SAP | Mission Completion |
| 39 | Guard Wharf Warehouse | RZT-333 | Inside Warehouse (*** YOU WILL LOSE THE MISSION ***) |
| 40 | Destroy "Plus" Escapee | GBG-XR | 2 floors below Mission Start |
| 41 | Destroy Intruders | WG-F699 | Crack in WAll below Misiion Start |
| 42 | Eliminate Strikers | WR-L24 | Behind Mission Start |
| 43 | Stop Gang, "Dark Soul" | SP-AXL | Mission Completion |
| 44 | Guard Factory Entrance | B-T001 | Northeast Corner |
| 45 | Retake Air Cleaner | WC-GN230 | Ceiling Duct (South in Main Chamber |
| 46 | Kill "Struggle" Leader | LS-99-MOONLIGHT | Behind you in Destructable Floor |
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